#NEXUS Begin trees; [Treefile saved Tue May 15 16:35:08 2001] [! >Data file = C:\sequenties\embl\embl6B.pau >Bootstrap method with neighbor-joining search: > Number of bootstrap replicates = 1000 > Starting seed = 1714831468 > Ties (if encountered) will be broken randomly > Distance measure = maximum-likelihood > Likelihood settings: > User-specified substitution rate matrix = > - 1.485 3.067 1.723 > 1.485 - 0.9675 3.866 > 3.067 0.9675 - 1 > 1.723 3.866 1 - > Assumed nucleotide frequencies (set by user): > A=0.24120 C=0.19600 G=0.23970 T=0.32310 > Among-site rate variation: > Assumed proportion of invariable sites = 0.1417 > Distribution of rates at variable sites = gamma (continuous) with shape > parameter (alpha) = 0.6895 > These settings correspond to the GTR+G+I model > (Tree is unrooted) ] Translate 1 Caenorhabditis_remanei_U13930, 2 Caenorhabditis_elegans_X03680, 3 Caenorhabditis_briggsae_U13929, 4 Caenorhabditis_vulgaris_U13931, 5 unidentified_nematode_U73446, 6 Otostrongylus_sp._U81589, 7 Parafilaroides_sp._U81590, 8 Heterorhabditis_bacteriophora_U70628, 9 Oscheius_sp._U81587, 10 Rhabditella_axei_U13934, 11 Rhabditis_myriophyla_U13936, 12 Pellioditis_typica_U13933, 13 Diploscapter_sp._U81586, 14 Rhabditis_blumi_U13935, 15 Cruznema_tripartitum_U73449, 16 Halicephalobus_gingivalis_AF202156, 17 Panagrolaimus_sp._U81579, 18 Turbatrix_aceti_AF202165, 19 Plectonchus_sp._AF202154, 20 Panagrobelus_stammeri_AF202153, 21 Strongyloides_rattiKT_U81581, 22 Strongyloides_stercoralis_M84229, 23 Rhabditophanes_sp._AF202151, 24 panagrolaimoid_nematode_U81580, 25 Aduncospiculum_halicti_U61759, 26 Diplogaster_lethieri_AF036643, 27 Pristionchus_lheritieri_AF036640, 28 Pristionchus_pacificus_U81584, 29 Teratorhabditis_palmarum_U13937, 30 Mesorhabditis_sp._U73452, 31 Bunonema_sp._U81582, 32 Pelodera_strongyloides_U13932, 33 Bursaphelenchus_sp._AF037369, 34 Brevibuca_sp._AF202163, 35 Parascaris_equorum_U94378, 36 Ascaris_suum_U94367, 37 Ascaris_lumbricoides_U94366, 38 Baylisascaris_procyonis_U94368, 39 Baylisascaris_transfuga_U94369, 40 Toxascaris_leonina_U94383, 41 Porrocaecum_depressum_U94379, 42 Toxocara_canis_U94382, 43 Contracaecum_multipapillatum_U94370, 44 Pseudoterranova_decipiens_U94380, 45 Anisakis_sp._U94365, 46 Anisakis_sp._U81575, 47 Terranova_caballeroi_U94381, 48 Goezia_pelagia_U94372, 49 Iheringascaris_inquies_U94377, 50 Hysterothylacium_pelagicum_U94375, 51 Hysterothylacium_fortalezae_U94374, 52 Hysterothylacium_reliquens_U94376, 53 Cruzia_americana_U94371, 54 Heterocheilus_tunicatus_U94373, 55 Wuchereria_bancrofti_AF227234, 56 Philonema_sp._U81574, 57 Litomosoides_sigmodontis_AF227233, 58 Dirofilaria_immitis_AF036638, 59 Gnathostoma_binucleatum_Z96946, 60 Gnathostoma_neoprocyonis_Z96947, 61 Gnathostoma_turgidum_Z96948, 62 Tylocephalus_auriculatus_AF202155, 63 Plectus_minimus_U61761, 64 Plectus_acuminatus_AF037628, 65 Myolaimus_sp._U81585, 66 Acrobeloides_bodenheimeri_AF202159, 67 Acrobeloides_bodenheimeri_AF202162, 68 Pseudacrobeles_variabilis_AF202150, 69 Cephalobus_sp._AF202158, 70 Cephalobus_sp._AF202160, 71 Cephalobus_oryzae_AF034390, 72 Acrobeloides_sp._AF034391, 73 Cervidellus_alutus_AF202152, 74 Acrobeles_sp._U81576, 75 Seleborca_complexa_U81577, 76 Acrobeles_ciliatus_AF202148, 77 Zeldia_punctata_U61760, 78 Cephalobus_cubaensis_AF202161, 79 Meloidogyne_arenaria_U42342, 80 Meloidogyne_incognitaKT_U81578, 81 Pratylenchoides_magnicauda_AF202157, 82 Subanguina_radicicola_AF202164, 83 Cuticularia_sp._U81583, 84 Cylindrolaimus_sp._AF202149, 85 Daptonema_procerus_AF047889, 86 Diplolaimelloides_meyli_AF036644, 87 Stilbonema_majum_Y16922, 88 Leptonemella_sp._Y16920, 89 Laxus_cosmopolitus_Y16918, 90 Laxus_oneistus_Y16919, 91 Catanema_sp._Y16912, 92 Eubostrichus_dianae_Y16915, 93 Eubostrichus_parasitiferus_Y16916, 94 Eubostrichus_topiarius_Y16917, 95 Robbea_hypermnestra_Y16921, 96 Desmodora_ovigera_Y16913, 97 Chromadoropsis_vivipara_AF047891, 98 Xyzzors_sp._Y16923, 99 Acanthopharynx_micans_Y16911, 100 Paracanthonchus_caecus_AF047888, 101 Enoplus_meridionalis_Y16914, 102 Enoplus_brevis_U88336, 103 Adoncholaimus_sp._AF036642, 104 Pontonema_vulgare_AF047890, 105 Trichuris_muris_AF036637, 106 Trichinella_spiralis_U60231, 107 Mermis_nigrescens_AF036641, 108 Priapulus_caudatus, 109 Pristionchus_pacificus_AF083010, 110 Pelodera_punctata_AF083018, 111 Paraspidodera_sp._AF083005, 112 Heterakis_sp._AF083003, 113 Rhabditoides_inermiformis_AF083017, 114 Poikilolaimus_regenfussi_AF083022, 115 Poikilolaimus_oxycerca_AF083023, 116 Oscheius_sp._AF082994, 117 Oscheius_insectivora_AF083019, 118 Pellioditis_marina_AF083021, 119 Pellioditis_mediterranea_AF083020, 120 Rhabditella_sp._AF083000, 121 Heterorhabditis_hepialus_AF083004, 122 Oscheius_sp._AF082995, 123 Oscheius_dolichuroides_AF082998, 124 Rhabditis_sp._AF083008, 125 Cephaloboides_sp._AF083027, 126 Choriorhabditis_dudichi_AF083012, 127 Caenorhabditis_sonorae_AF083026, 128 Caenorhabditis_drosophilae_AF083025, 129 Caenorhabditis_sp._AF083006, 130 Rhabditoides_inermis_AF082996, 131 Diploscapter_sp._AF083009, 132 Protorhabditis_sp._AF083024, 133 Protorhabditis_sp._AF083001, 134 Rhabditoides_regina_AF082997, 135 Crustorhabditis_scanica_AF083014, 136 Parasitorhabditis_sp._AF083028, 137 Distolabrellus_veechi_AF082999, 138 Distolabrellus_veechi_AF083011, 139 Teratorhabditis_synpapillata_AF083015, 140 Mesorhabditis_spiculigera_AF083016, 141 Mesorhabditis_anisomorpha_AF083013, 142 Pelodera_teres_AF083002, 143 Panagrellus_redivivus_AF083007 ; tree PAUP_1 = [&R] (108:100.0,(((((((((((1:100.0,((2:100.0,4:100.0)72.0:72.0,3:100.0)85.5:85.5)99.1:99.1,(5:100.0,129:100.0)54.2:54.2)99.6:99.6,128:100.0)100.0:100.0,127:100.0)99.7:99.7,(((13:100.0,131:100.0)99.0:99.0,132:100.0)100.0:100.0,133:100.0)100.0:100.0)70.3:70.3,(((6:100.0,7:100.0)100.0:100.0,(8:100.0,121:100.0)99.7:99.7)91.5:91.5,(((9:100.0,(122:100.0,123:100.0)100.0:100.0)100.0:100.0,((10:100.0,120:100.0)96.5:96.5,125:100.0)91.9:91.9,((11:100.0,116:100.0)87.2:87.2,117:100.0)90.0:90.0,12:100.0,(118:100.0,119:100.0)79.8:79.8)67.7:67.7,(14:100.0,124:100.0)100.0:100.0)70.0:70.0,15:100.0)60.6:60.6,126:100.0)99.9:99.9,((((((16:100.0,17:100.0)52.2:52.2,18:100.0)76.8:76.8,143:100.0)100.0:100.0,(19:100.0,20:100.0)100.0:100.0)100.0:100.0,((21:100.0,22:100.0)100.0:100.0,(23:100.0,24:100.0)100.0:100.0)100.0:100.0)95.1:95.1,33:100.0)72.1:72.1,(25:100.0,((26:100.0,27:100.0)97.7:97.7,(28:100.0,109:100.0)67.8:67.8)100.0:100.0)99.9:99.9,(((((29:100.0,139:100.0)95.2:95.2,((30:100.0,141:100.0)56.5:56.5,135:100.0,136:100.0)58.9:58.9)55.9:55.9,(137:100.0,138:100.0)100.0:100.0,140:100.0)81.6:81.6,134:100.0)56.6:56.6,((32:100.0,110:100.0)100.0:100.0,142:100.0)53.7:53.7)83.9:83.9,(31:100.0,((83:100.0,115:100.0)90.9:90.9,114:100.0)62.7:62.7)64.0:64.0,34:100.0,((((((((((35:100.0,36:100.0)63.7:63.7,37:100.0,(38:100.0,39:100.0)88.7:88.7)51.4:51.4,40:100.0)76.9:76.9,41:100.0,42:100.0,43:100.0)57.3:57.3,(((44:100.0,45:100.0)57.2:57.2,46:100.0)55.1:55.1,47:100.0)55.6:55.6,((48:100.0,(49:100.0,50:100.0)53.8:53.8)79.9:79.9,(51:100.0,52:100.0)100.0:100.0)93.5:93.5)58.4:58.4,53:100.0,54:100.0)57.9:57.9,(111:100.0,112:100.0)84.2:84.2)67.3:67.3,((55:100.0,58:100.0)95.5:95.5,57:100.0)100.0:100.0)69.9:69.9,56:100.0)97.9:97.9,((59:100.0,61:100.0)68.5:68.5,60:100.0)100.0:100.0)99.9:99.9,(62:100.0,(63:100.0,64:100.0)96.2:96.2)100.0:100.0,65:100.0,(((((66:100.0,67:100.0)100.0:100.0,68:100.0,(((69:100.0,71:100.0)82.1:82.1,70:100.0)73.8:73.8,72:100.0)94.1:94.1,(73:100.0,(74:100.0,75:100.0)93.1:93.1)66.9:66.9,76:100.0)65.8:65.8,77:100.0)72.0:72.0,78:100.0)100.0:100.0,((79:100.0,80:100.0)100.0:100.0,(81:100.0,82:100.0)84.6:84.6)99.0:99.0)85.4:85.4,113:100.0,130:100.0)99.8:99.8,84:100.0)84.2:84.2,(85:100.0,86:100.0)100.0:100.0)99.9:99.9,(((87:100.0,(88:100.0,((89:100.0,90:100.0)100.0:100.0,91:100.0)67.7:67.7)68.0:68.0)76.0:76.0,(92:100.0,(93:100.0,94:100.0)100.0:100.0)88.2:88.2)56.1:56.1,95:100.0,(((96:100.0,97:100.0)56.9:56.9,98:100.0)66.4:66.4,99:100.0)77.8:77.8)100.0:100.0)84.6:84.6,100:100.0)87.6:87.6,((101:100.0,102:100.0)100.0:100.0,(103:100.0,104:100.0)100.0:100.0)83.0:83.0,((105:100.0,106:100.0)100.0:100.0,107:100.0)99.7:99.7)0; End;