Project 2 :

Bof Project on "Architecture and evolution of genetic circuits. A science-philosophical analysis of self-organization and selection in genetic and epigenetic evolution"
Promoter: Prof. Dr. Gertrudis Van de Vijver University of Gent Department of Philosophy and Moral Science Blandijnberg 2 B - 9000 Gent, Belgium.
Co-promoter: Prof. Dr. Anna Depicker University of Gent Department of Molecular Genetics Ledeganckstraat 35 B - 9000 Gent, Belgium.
Researcher: : Lien Van Speybroeck University of Gent Departement of Philosophy and Moral Science Blandijnberg 2 - Room 210 B - 9000 Gent Belgium Tel: +32 9 264 39 69 Fax: +32 9 264 41 97 Email: Linda.VanSpeybroeck@rug.ac.be

Contents :

This project makes a science-philosophical study of the behavior and the evolution of the genome, seen as a dynamic networksystem, and implies to analyse the impact of self-organization and selection in these processes. Especially, epigenetics and its relation to evolution is investigated via (1) a theoretical analysis of the relevant literature in molecular genetics and evolutionary theory and (2) an experimental study of transgenerational gene-expression of an epigenetic regulated transgene in Arabidopsis thaliana. Further, the historical-conceptual shift from 'epigenesis' to 'epigenetics' is investigated in relation to the preformationist-debate during the 16th -18th century. Whereas genetics refers to the study and mapping of linear nucleotide sequences, their mutations and inheritance, epigenetics refers to the structural organization and evolution of the genome. Epigenetic studies indicate that not all heritable information leading to the phenotype is "inscribed" in the DNA base sequence. In this sense, epigenetics - as the term indicates - goes beyond genetics, thereby (1) leaving behind the gene-centered view from within molecular biology itself, and (2) urging bio-philosophers to change their focus from criticizing the central dogma to evaluating new developments in molecular research. In the epigenetic approach, a hierarchy of genomic contexts can be revealed, consisting basically of an intracellular, an intercellular, and an organismic level. The first explorations on the organismic level suggest that under certain conditions the somatic constitution of the organism and how it stands in close interaction with its environment are to be taken into account as factors influencing the genomic constitution. Depending on the specificity of these conditions, the organism and its history and actuality can be seen as a crucial genomic context - leading to a more complex perception of the local dynamics and the structure of the genome and its consequences for development and evolution. This "organism in the world" view fits well with the philosophical tradition of Developmental Systems Theory, although epigeneticists seek to enlarge the genetic picture of biology by gradually expanding the range of molecular processes which influence the genome, thereby decentralizing the sovereign role of the genome, without loosing track of experimental demands.

Keywords :

Science-philosophy, experimental molecular biology, self-organization, natural selection, evolutionary theory, genetics, epigenetics, gene-expression, genomic context, epigenesis, preformationism.

Financial Support :

Bijzonder Onderzoeksfonds Project number 011066 99 (Jan. 1999 - Dec. 2000)

Publications :

2000 Van Speybroeck, Linda. The organism: a crucial genomic context in molecular epigenetics? Theory in Bioscience, june 2000, special issue.